PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004497606.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family Trihelix
Protein Properties Length: 501aa    MW: 58727.9 Da    PI: 6.723
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004497606.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.31.2e-29122207187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++qe+l+L+e+r++++ +++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r+  + +++++f+qlea
  XP_004497606.1 122 RWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMcEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRH--DGKHYRFFRQLEA 207
                     8***********************************998*******************************985..5557*******85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.131115180IPR017877Myb-like domain
CDDcd122032.17E-19122187No hitNo description
PfamPF138379.0E-20122208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MKMEDHHNNH GHHHHHHHQQ QQYGDITTDL RQLVNGTRFP SSEEFFPGHR NLTALVTPQQ  60
QQQYEMMMLG HRGVVLEDFN TSMNTIVPPP LPPTTTTTTT TSVSVSTPET AGCIGGDAST  120
GRWPRQETLT LLEIRSRLDP KFKEANQKGP LWDEVSRIMC EEHGYQRSGK KCREKFENLY  180
KYYKKTKEGK AGRHDGKHYR FFRQLEALYG ENSNTTCLPE TNFVNNFNFQ KNQEIFHHNN  240
NINNSNNKNI CDDHSLSLTN STDFDTSSCD DDDNDQSNDK RRKRKSGRRS WKVKIKEFID  300
SQMKKLVEKQ EEWLSKLVKT LEEKEKERVL RDEEWRKQEV KRVEREQKFW ANERAWIEAR  360
DAALMEALKN INGREMLMKV EDHDHDEGVI MESHHEIQNN IEKMNEAESE EGNKKRKEKT  420
RSCFYFDNNE QSSMYNNQGS TYCDVNDQQR EESIVKLQRN IDHDGTSPSN SNVGSFPFLI  480
SEGGNLWENF GLKINKENQN H
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150415e-46AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004497606.10.0PREDICTED: trihelix transcription factor PTL-like
SwissprotQ9LZS02e-93PTL_ARATH; Trihelix transcription factor PTL
TrEMBLA0A072VKX90.0A0A072VKX9_MEDTR; Trihelix transcription factor
STRINGGLYMA10G07730.11e-153(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10000.17e-75Trihelix family protein